Joseph Groom, Ph.D. (he/him/his)

Part-time Lecturer

Joseph Groom, Ph.D. (he/him/his)

Part-time Lecturer

Dr. Joseph Groom completed his undergraduate degree in Biology and German at Vanderbilt University, and his Ph.D. at the University of Georgia studying the genetics of biofuel-producing bacteria. For his postdoctoral research at the University of Washington he applied his molecular genetic training to different bacteria that consume the greenhouse gas methane. Later as an assistant professor at California State University-Long Beach, he continued using eccentric microbes as genetic study systems to unravel the mechanisms of greenhouse gas conversion. He has included enthusiastic students in his research, in his teaching, and in a combination of both. Currently he works a Research Scientist at the University of Washington and teaches courses both at the UW Seattle and UW Bothell campuses.


Education

  • University of Georgia, Athens, GA
    • Ph.D. – Genetics
  • Vanderbilt University, Nashville, TN
    • B.A. – Molecular & Cellular Biology, German

Courses

  • BBIO 370 Microbiology
  • BBIO 375 Molecular Biology

Teaching Interests

Molecular biology, microbiology, microbial physiology, microbial genetics

Research and Scholarship Interests

Using eccentric microbes as genetic study systems to unravel the mechanisms of greenhouse gas conversion and sustainable chemical production

Creative Interests

Paddleboarding, hiking, music

  • Groom JD. 2025. Genetic regulation by lanthanides in the Type I methanotroph Methylotuvimicrobium buryatense 5GB1C. Foundation and Frontiers in Enzymology: Lanthanides in Enzymology and Microbiology, Academic Press, 107-120. doi: 10.1016/B978-0-443-13307-7.00007-4.
  • He L, Groom JD, Wilson EH, Fernandez J, Konopka MC, Beck DAC, Lidstrom ME. 2023. A methanotrophic bacterium to enable methane removal for climate mitigation. PNAS, 120(35), e:2310046120.
  • Wilson EH, Groom JD, Sarfatis MC, Ford SM, Lidstrom ME, Beck DAC. 2021. A computational framework for identifying promoter sequences in nonmodel organisms using RNA-seq data sets. ACS Synthetic Biology 10(6): 1394-1405. doi: 10.1021/acssynbio.1c00017.
  • Groom JD and Lidstrom ME. 2021. Cultivation techniques to study lanthanide metal interactions in the haloalkaliphilic Type I methanotroph “Methylotuvimicrobium buryatense” 5GB1C. Methods in Enzymology, Academic Press, Vol. 650, 237-259. doi: 10.1016/bs.mie.2021.01.042.
  • Groom JD, Ford SM, Pesesky MW, Lidstrom ME. 2019. A mutagenic screen identifies a TonB−dependent receptor required for the lanthanide metal switch in the Type I methanotroph “Methylotuvimicrobium buryatense” 5GB1C. Journal of Bacteriology, doi: 10.1128/JB.00120-19.
  • Groom J, Chung D, Olson DG, Lynd LR, Guss AM, Westpheling J. 2016. Promiscuous plasmid replication in thermophiles: Use of a novel hyperthermophilic replicon for genetic manipulation of Clostridium thermocellum at its optimum growth temperature. Metabolic Engineering Communications 3, 30-38.
  • Reviewer, Proceedings of the National Academy of Sciences
  • Reviewer, Applied and Environmental Microbiology
  • Contributor, STEP blog on Life Sciences Education research, UW
  • Reviewer, Biotechnology and Bioengineering